miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|52513723|gb|CV260748.1|CV260748 TTTTTTTTTTTTTTTTTTGTCACAGAAAATAGGGTAGATGAAACAGTGAAAATGTATTATAACCGTTGAATCTACAGTAC
ATGTCTAGCAAATGAGTGGCTGTTTTTCCTCTAACAGACTTGATTGCTAGGAGAGCATGAAAGACAGCCTGAGAGAGGGA
AACTACAAAATGTTACACGGCAAAGCTCAGAATTTCCATATGAAGAAGGCTCCTGATGTTACATCATGGCAAAGCTAATT
CCTGGTAGAGAAGTATGAACAAACATTATGATTATTTTTTTGATGAACCGAAACCGCCAAACCCCATCATAGCTGCAATA
TCAGGATCAATATCAGCTTCTTCCTCCTCTGCTGCCTTCTCTTTCTTTTTCTCTTTCTTTCTTTCTCGGCGTTGACGCTT
GCGTTCCTCCTCTTCTTCTTGCTGTTTTAAGATCCGTTCATCAAGATCTTGCTCTGTGAAGCTTCCAGGTTCTCTACGTT
TCTTGAGCTTTTCAAATCGCTCTTGGACCTGTTGAAGAGATGCACGCTCCACCCGCATAGACATGCCCAAAGCTCTTTGG
TGTTTCTTTCCATTGATGTGATCCAAGTAGTTTGCAGAATCCTTTACCACACACTCACAAACTGAACAGTAGTATCCAGC
CTGCTGACTTAGAGGTGCAATTGGTGTAACAACCTGAGTTTTCCCCAACCGAGAGTCGAGATCAACTTCATAGTCCCTAT
GCTTCAAGGGCTTCCTTTGCACCGGTGGCCCTTTCGATTTAGATTTCCCACGACCCTCGGCTTCCTGTTTTTCACGCTCA
CGAGCGCGTTCTAAGTACTCTTCTGGATCGAATTTTCTTCTGAATGTATTATCAACACTACCACCAGTATTGTTATTTTC
CATTGAAAACACAAATAAAAATTTTGC




Most similar to sp|Q9CPW7|ZMAT2_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9CPW7|ZMAT2_MOUSE Zinc finger matrin-type protein 2 OS=Mus
           musculus GN=Zmat2 PE=2 SV=1
          Length = 199

 Score =  142 bits (358), Expect = 3e-33
 Identities = 76/147 (51%), Positives = 99/147 (67%), Gaps = 3/147 (2%)
 Frame = -1

Query: 862 GSVDNTFRRKFDPEEYLXXXXXXXXXXXXXXXKSKSKGPPVQ---RKPLKHRDYEVDLDS 692
           G+ +  FRRK+D +EY                + K  G PVQ   R+ L+HRDY+VDL+S
Sbjct: 6   GTKNLDFRRKWDKDEY-----EKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES 60

Query: 691 RLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQ 512
           +LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++L 
Sbjct: 61  KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD 120

Query: 511 QVQERFEKLKKRREPGSFTEQDLDERI 431
           QV++RFE  KK+ E     + D +ER+
Sbjct: 121 QVKKRFEVNKKKMEEKQ-KDYDFEERM 146